Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Transcription Elongation From Rna Polymerase Ii Promoter (GO:0006368) Genes Targeted by hsa-mir-579 in CA Breast Sorlie Cluster 16 Table contains all genes in the CA Breast Sorlie cluster number 16. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-579 GO:0006368 7097 TLR2 toll-like receptor 2 [Source:HGNC Symbol;Acc:11848] T 10236 HNRNPR heterogeneous nuclear ribonucleoprotein R [Source:HGNC Symbol;Acc:5047] zzz999 6198 RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Source:HGNC Symbol;Acc:10436] P T 9541 CIR1 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:24217] zzz999 5216 PFN1 profilin 1 [Source:HGNC Symbol;Acc:8881] zzz999 9559 VPS26A vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711] T 5930 RBBP6 retinoblastoma binding protein 6 [Source:HGNC Symbol;Acc:9889] zzz999 5795 PTPRJ protein tyrosine phosphatase, receptor type, J [Source:HGNC Symbol;Acc:9673] T 10927 SPIN1 spindlin 1 [Source:HGNC Symbol;Acc:11243] T 2058 EPRS glutamyl-prolyl-tRNA synthetase [Source:HGNC Symbol;Acc:3418] T 950 SCARB2 scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665] T 960 CD44 CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:1681] T 6421 SFPQ splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774] zzz999 4676 NAP1L4 nucleosome assembly protein 1-like 4 [Source:HGNC Symbol;Acc:7640] zzz999 51465 UBE2J1 ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast) [Source:HGNC Symbol;Acc:17598] T 90141 EFCAB11 EF-hand calcium binding domain 11 [Source:HGNC Symbol;Acc:20357] zzz999 8774 NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma [Source:HGNC Symbol;Acc:7642] zzz999 9747 FAM115A family with sequence similarity 115, member A [Source:HGNC Symbol;Acc:22201] zzz999 10772 SRSF10 serine/arginine-rich splicing factor 10 [Source:HGNC Symbol;Acc:16713] T 51316 PLAC8 placenta-specific 8 [Source:HGNC Symbol;Acc:19254] T 23157 SEPT6 septin 6 [Source:HGNC Symbol;Acc:15848] T 8846 ALKBH1 alkB, alkylation repair homolog 1 (E. coli) [Source:HGNC Symbol;Acc:17911] T 1027 CDKN1B cyclin-dependent kinase inhibitor 1B (p27, Kip1) [Source:HGNC Symbol;Acc:1785] T 6745 SSR1 signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] zzz999 9351 SLC9A3R2 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 [Source:HGNC Symbol;Acc:11076] zzz999 1385 CREB1 cAMP responsive element binding protein 1 [Source:HGNC Symbol;Acc:2345] T 56647 BCCIP BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:978] zzz999 5431 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Source:HGNC Symbol;Acc:9188] zzz999 Yes 55319 C4orf43 chromosome 4 open reading frame 43 [Source:HGNC Symbol;Acc:25638] T 2961 GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa [Source:HGNC Symbol;Acc:4651] zzz999 Yes 9801 MRPL19 mitochondrial ribosomal protein L19 [Source:HGNC Symbol;Acc:14052] zzz999 9772 KIAA0195 KIAA0195 [Source:HGNC Symbol;Acc:28983] zzz999 23649 POLA2 polymerase (DNA directed), alpha 2 (70kD subunit) [Source:HGNC Symbol;Acc:30073] zzz999 8019 BRD3 bromodomain containing 3 [Source:HGNC Symbol;Acc:1104] zzz999 1994 ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) [Source:HGNC Symbol;Acc:3312] T 9804 TOMM20 translocase of outer mitochondrial membrane 20 homolog (yeast) [Source:HGNC Symbol;Acc:20947] zzz999 11335 CBX3 chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] T 4686 NCBP1 nuclear cap binding protein subunit 1, 80kDa [Source:HGNC Symbol;Acc:7658] zzz999 Yes 10527 IPO7 importin 7 [Source:HGNC Symbol;Acc:9852] zzz999 25972 UNC50 unc-50 homolog (C. elegans) [Source:HGNC Symbol;Acc:16046] zzz999 7262 PHLDA2 pleckstrin homology-like domain, family A, member 2 [Source:HGNC Symbol;Acc:12385] T 3192 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048] zzz999 25801 GCA grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:15990] T 9329 GTF3C4 general transcription factor IIIC, polypeptide 4, 90kDa [Source:HGNC Symbol;Acc:4667] P T 7581 ZNF33A zinc finger protein 33A [Source:HGNC Symbol;Acc:13096] T 10988 METAP2 methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:16672] T 6749 SSRP1 structure specific recognition protein 1 [Source:HGNC Symbol;Acc:11327] zzz999 Yes 6050 RNH1 ribonuclease/angiogenin inhibitor 1 [Source:HGNC Symbol;Acc:10074] zzz999 1352 COX10 COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast) [Source:HGNC Symbol;Acc:2260] zzz999 3837 KPNB1 karyopherin (importin) beta 1 [Source:HGNC Symbol;Acc:6400] zzz999 2729 GCLC glutamate-cysteine ligase, catalytic subunit [Source:HGNC Symbol;Acc:4311] T 7803 PTP4A1 protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] T 1633 DCK deoxycytidine kinase [Source:HGNC Symbol;Acc:2704] T 7189 TRAF6 TNF receptor-associated factor 6 [Source:HGNC Symbol;Acc:12036] T 55800 SCN3B sodium channel, voltage-gated, type III, beta [Source:HGNC Symbol;Acc:20665] T 10190 TXNDC9 thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:24110] T 114928 GPRASP2 G protein-coupled receptor associated sorting protein 2 [Source:HGNC Symbol;Acc:25169] P T 150465 TTL tubulin tyrosine ligase [Source:HGNC Symbol;Acc:21586] zzz999 58517 RBM25 RNA binding motif protein 25 [Source:HGNC Symbol;Acc:23244] T 2214 FCGR3A Fc fragment of IgG, low affinity IIIa, receptor (CD16a) [Source:HGNC Symbol;Acc:3619] zzz999 3550 IK IK cytokine, down-regulator of HLA II [Source:HGNC Symbol;Acc:5958] zzz999 7428 VHL von Hippel-Lindau tumor suppressor [Source:HGNC Symbol;Acc:12687] zzz999 4999 ORC2 origin recognition complex, subunit 2 [Source:HGNC Symbol;Acc:8488] T 2965 GTF2H1 general transcription factor IIH, polypeptide 1, 62kDa [Source:HGNC Symbol;Acc:4655] P T Yes 197 AHSG alpha-2-HS-glycoprotein [Source:HGNC Symbol;Acc:349] zzz999 2782 GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 [Source:HGNC Symbol;Acc:4396] P T 3454 IFNAR1 interferon (alpha, beta and omega) receptor 1 [Source:HGNC Symbol;Acc:5432] T 2035 EPB41 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) [Source:HGNC Symbol;Acc:3377] T 4353 MPO myeloperoxidase [Source:HGNC Symbol;Acc:7218] zzz999 54622 ARL15 ADP-ribosylation factor-like 15 [Source:HGNC Symbol;Acc:25945] T 10407 SPAG11B sperm associated antigen 11B [Source:HGNC Symbol;Acc:14534] zzz999 23595 ORC3 origin recognition complex, subunit 3 [Source:HGNC Symbol;Acc:8489] zzz999 11120 BTN2A1 butyrophilin, subfamily 2, member A1 [Source:HGNC Symbol;Acc:1136] T 81573 ANKRD13C ankyrin repeat domain 13C [Source:HGNC Symbol;Acc:25374] T 1363 CPE carboxypeptidase E [Source:HGNC Symbol;Acc:2303] zzz999 10914 PAPOLA poly(A) polymerase alpha [Source:HGNC Symbol;Acc:14981] T 55217 TMLHE trimethyllysine hydroxylase, epsilon [Source:HGNC Symbol;Acc:18308] zzz999 6741 SSB Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316] zzz999 3385 ICAM3 intercellular adhesion molecule 3 [Source:HGNC Symbol;Acc:5346] zzz999 4800 NFYA nuclear transcription factor Y, alpha [Source:HGNC Symbol;Acc:7804] zzz999 9638 FEZ1 fasciculation and elongation protein zeta 1 (zygin I) [Source:HGNC Symbol;Acc:3659] zzz999 355 FAS Fas (TNF receptor superfamily, member 6) [Source:HGNC Symbol;Acc:11920] zzz999 80781 COL18A1 collagen, type XVIII, alpha 1 [Source:HGNC Symbol;Acc:2195] T

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